Visualizations
Simuated Datasets
Overlap of simulated groups
## [,1] [,2] [,3] [,4] [,5]
## [1,] 1.000000e+00 8.199475e-05 1.591316e-05 8.991103e-05 1.102601e-04
## [2,] 8.199475e-05 1.000000e+00 1.266408e-05 2.231615e-05 3.234482e-05
## [3,] 1.591316e-05 1.266408e-05 1.000000e+00 4.106627e-06 2.013759e-05
## [4,] 8.991103e-05 2.231615e-05 4.106627e-06 1.000000e+00 3.637567e-05
## [5,] 1.102601e-04 3.234482e-05 2.013759e-05 3.637567e-05 1.000000e+00
## [,1] [,2] [,3] [,4] [,5]
## [1,] 1.0000000000 0.0009122709 0.0002599298 0.0004950372 0.0005356701
## [2,] 0.0009122709 1.0000000000 0.0003956514 0.0000676802 0.0005317322
## [3,] 0.0002599298 0.0003956514 1.0000000000 0.0003189478 0.0011246130
## [4,] 0.0004950372 0.0000676802 0.0003189478 1.0000000000 0.0000686526
## [5,] 0.0005356701 0.0005317322 0.0011246130 0.0000686526 1.0000000000
## [,1] [,2] [,3] [,4] [,5]
## [1,] 1.000000000 0.003632058 0.003685187 0.006233438 0.002993035
## [2,] 0.003632058 1.000000000 0.002812374 0.007597109 0.007604045
## [3,] 0.003685187 0.002812374 1.000000000 0.004957378 0.004332788
## [4,] 0.006233438 0.007597109 0.004957378 1.000000000 0.005151115
## [5,] 0.002993035 0.007604045 0.004332788 0.005151115 1.000000000
## [,1] [,2] [,3] [,4] [,5]
## [1,] 1.00000000 0.02190722 0.02237097 0.02612153 0.01304081
## [2,] 0.02190722 1.00000000 0.02694079 0.04901333 0.02402648
## [3,] 0.02237097 0.02694079 1.00000000 0.02104955 0.01790143
## [4,] 0.02612153 0.04901333 0.02104955 1.00000000 0.01998042
## [5,] 0.01304081 0.02402648 0.01790143 0.01998042 1.00000000
## [,1] [,2] [,3] [,4] [,5]
## [1,] 1.0000000 0.1437516 0.1028901 0.1128585 0.1023571
## [2,] 0.1437516 1.0000000 0.1280824 0.1316831 0.1436521
## [3,] 0.1028901 0.1280824 1.0000000 0.1147468 0.1576794
## [4,] 0.1128585 0.1316831 0.1147468 1.0000000 0.1084354
## [5,] 0.1023571 0.1436521 0.1576794 0.1084354 1.0000000Fig. S1: UMAP and RadViz3D of 100D MixSim Simulated Datasets
|
(a) UMAP, omega = 0.0001 |
(f) RadViz3D, omega = 0.0001 |
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(b) UMAP, omega = 0.001 |
(g) RadViz3D, omega = 0.001 |
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(c) UMAP, omega = 0.01 |
(h) RadViz3D, omega = 0.01 |
|
(d) UMAP, omega = 0.05 |
(i) RadViz3D, omega = 0.05 |
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(e) UMAP, omega = 0.25 |
(j) UMAP, omega = 0.25 |
Radviz3d, Viz3D, 3D UMAP, 3D tSNE and Star coordinate plots with OLDA and ULDA
Fig. S2: Gamma Ray Burst Dataset
|
(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
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(e) Viz3D |
(f) RadViz3D |
Fig. S3: Zipcode Digits Dataset
|
(a) t-SNE |
(b) UMAP | |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
|
(e) Viz3D |
(f) RadViz3D |
Fig. S4: Faces
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(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
(e) Viz3D |
(f) RadViz3D |
Fig. S5: Suicide Ideation
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(a) t-SNE |
(b) UMAP |
|
(c) Viz3D |
(d) RadViz3D |
Fig. S6: Voting Records of US Senators (Senators Dataset)
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(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
(e) Viz3D |
(f) RadViz3D |
Fig. S7: Autism Spectrum Disorder (ASD) Screening (Autisim Dataset)
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(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
(e) Viz3D |
(f) RadViz3D |
Fig. S8: SPECT Heart Datset
|
(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
(e) Viz3D |
(f) RadViz3D |
Fig. S8: Indic scripts (Script Dataset, 6 groups)
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(a) t-SNE |
(b) UMAP |
 (c) Stars with OLDA |
 (d) Stars with ULDA |
|
(e) Viz3D |
(f) RadViz3D |
Fig. S9: RNA sequences of human tissues (Gtex Dataset)
|
(a) t-SNE |
(b) UMAP |
|
(c) Viz3D |
(d) RadViz3D |